../../tmp/servers/virsirnadb/1834203575
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi1212 | 1 | actgcagagagtgctgata | 19 | |
| AF011751.1 | Hepatitis C virus strain H77 pCV-H77C polyprotein gene, complete cds | 9559 | ................... | 9577 | 100 |
| AF011752.1 | Hepatitis C virus strain H77 pCV-H11 polyprotein gene, complete cds | 9559 | ................... | 9577 | 100 |
| AF011753.1 | Hepatitis C virus strain H77 pH21 polyprotein gene, complete cds | 9559 | ................... | 9577 | 100 |
| D89815.1 | Hepatitis C virus genomic RNA, complete sequence | 9508 | ................... | 9526 | 100 |
| AF054247.1 | Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L6S, complete | 9555 | ................... | 9573 | 100 |
| AF054248.1 | Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L2S, complete | 9555 | ................... | 9573 | 100 |
| AF054249.1 | Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L4S, complete | 9556 | ................... | 9574 | 100 |
| AJ238799.1 | Hepatitis C virus type 1b complete genome, isolate Con1 | 9565 | ................... | 9583 | 100 |
| AF176573.1 | Hepatitis C virus subtype 1b strain 274933RU, complete genome | 9560 | ................... | 9578 | 100 |
| AB016785.1 | Hepatitis C virus genomic RNA, complete sequence | 9498 | ................... | 9516 | 100 |
| AF271632.1 | Hepatitis C virus subtype 1a clone pHCV-1/SF9 A, complete genome | 9578 | ................... | 9596 | 100 |
| AJ278830.1 | Hepatitis C virus genomic RNA for polyprotein gene | 9570 | ................... | 9588 | 100 |
| AB049088.1 | Hepatitis C virus genomic RNA, complete genome, isolate: HCVT094 | 9576 | ................... | 9594 | 100 |
| AB049089.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT10 | 9531 | ................... | 9549 | 100 |
| AB049090.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT14 | 9531 | ................... | 9549 | 100 |
| AB049091.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT14 | 9507 | ................... | 9525 | 100 |
| AB049095.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT16 | 9545 | ................... | 9563 | 100 |
| AB049101.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT22 | 9558 | ................... | 9576 | 100 |
| AF333324.1 | Hepatitis C virus type 1b polyprotein mRNA, complete cds | 9547 | ................... | 9565 | 100 |
| AF356827.1 | Hepatitis C virus subtype 1b isolate HCV-S1, complete genome | 9569 | ................... | 9587 | 100 |
| AY045702.1 | Hepatitis C virus isolate HCR6, complete genome | 9571 | ................... | 9589 | 100 |
| AF139594.2 | Hepatitis C virus subtype 1b strain HCV-N, complete genome | 9576 | ................... | 9594 | 100 |
| AB080299.1 | Hepatitis C virus genomic RNA, complete genome, isolate:M1LE | 9547 | ................... | 9565 | 100 |
| AY460204.1 | Hepatitis C virus from Shanghai, complete genome | 9537 | ................... | 9555 | 100 |
| D84263.2 | Hepatitis C virus (isolate VN235) genomic RNA, complete genome | 9575 | ................... | 9593 | 100 |
| AB191333.1 | Hepatitis C virus genomic RNA, complete genome, strain:0 | 9547 | ................... | 9565 | 100 |
| DQ071885.1 | Hepatitis C virus subtype 1b polyprotein mRNA, complete cds | 9565 | ................... | 9583 | 100 |
| AB249644.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima | 9519 | ................... | 9537 | 100 |
| EF621489.1 | Hepatitis C virus subtype 1a strain HC-TN, complete genome | 9559 | ................... | 9577 | 100 |
| AB426117.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima | 9519 | ................... | 9537 | 100 |
| AB435162.2 | Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima | 9581 | ................... | 9599 | 100 |
| EU857431.1 | Hepatitis C virus subtype 1b isolate Whu, complete genome | 9563 | ................... | 9581 | 100 |
| AB442219.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: 1B- | 9547 | ................... | 9565 | 100 |
| AB442220.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: KAH | 9547 | ................... | 9565 | 100 |
| AB442221.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: KAH | 9547 | ................... | 9565 | 100 |
| AB442222.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: 1B- | 9550 | ................... | 9568 | 100 |
| FN435993.1 | Hepatitis C virus subtype 1b complete genome, isolate EU1, genomic RN | 9573 | ................... | 9591 | 100 |
| AB520610.1 | Hepatitis C virus subtype 1a genomic RNA, complete genome, strain: HC | 9558 | ................... | 9576 | 100 |
| GU133617.1 | Hepatitis C virus subtype 1b, complete genome | 9606 | ................... | 9624 | 100 |
| D84262.2 | Hepatitis C virus (isolate Th580) genomic RNA, complete genome GCCAGC | 9588 | ................... | 9606 | 100 |
| AF009606.1 | Hepatitis C virus subtype 1a polyprotein gene, complete cds | 9606 | ................... | 9624 | 100 |
| D85516.1 | Hepatitis C virus genomic RNA, complete cds | 9495 | ..c................ | 9513 | 94 |
| AJ132997.1 | Hepatitis C virus, complete genome, isolate HCV-AD78P1 | 9493 | ..c................ | 9511 | 94 |
| D84264.2 | Hepatitis C virus (isolate VN405) genomic RNA, complete genome | 9561 | .................a. | 9579 | 94 |
| D84264.2 | Hepatitis C virus (isolate VN405) genomic RNA, complete genome | 6888 | .........gc.....c._ | 6905 | 78 |
| D84265.2 | Hepatitis C virus (isolate VN004) genomic RNA, complete genome | 9582 | .................__ | 9598 | 89 |
| AF169002.1 | Hepatitis C virus subtype 2a isolate NDM228, complete genome | 9620 | ..............c.___ | 9635 | 78 |
| AF169003.1 | Hepatitis C virus subtype 2a isolate G2aK1, complete genome | 9653 | ..............c.___ | 9668 | 78 |
| AF169004.1 | Hepatitis C virus subtype 2a isolate G2aK3, complete genome | 9613 | ..............c.___ | 9628 | 78 |
| AF169005.1 | Hepatitis C virus subtype 2a isolate NDM59, complete genome | 9660 | ..............c.___ | 9675 | 78 |
| AB030907.1 | Hepatitis C virus (isolate JPUT971017) genomic RNA, complete genome | 9614 | ..............c.___ | 9629 | 78 |
| AB047639.1 | Hepatitis C virus (isolate JFH-1) genomic RNA, complete genome | 9638 | ..............c.___ | 9653 | 78 |
| AB047640.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-1 | 9634 | ..............c.___ | 9649 | 78 |
| AB047642.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-3 | 9638 | ..............c.___ | 9653 | 78 |
| AB047643.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-4 | 9601 | ..............c.___ | 9616 | 78 |
| AB047644.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-5 | 9651 | ..............c.___ | 9666 | 78 |
| AB047645.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-6 | 9643 | ..............c.___ | 9658 | 78 |
| EU363761.1 | Recombinant Hepatitis C virus H77C/JFH1, complete genome | 9626 | ..............c.___ | 9641 | 78 |
| AF177036.1 | Hepatitis C virus subtype 2a strain HC-J6CH clone pJ6CF, complete gen | 9671 | ..............c.___ | 9686 | 78 |
| AB047641.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-2 | 9619 | ..........t...c.___ | 9634 | 73 |
| AY746460.1 | Hepatitis C virus genotype 2a polyprotein gene, complete cds | 9649 | ..........t...c.___ | 9664 | 73 |
| AY878650.1 | Hepatitis C virus subtype 6k isolate KM45, complete genome | 6871 | ..........c...c.___ | 6886 | 73 |
| AY878651.1 | Hepatitis C virus subtype 6k isolate KM41, complete genome | 8548 | .t...t..........___ | 8563 | 73 |
| DQ278891.1 | Hepatitis C virus subtype 6k isolate KM45, complete genome | 6887 | ..........c...c.___ | 6902 | 73 |
| DQ278893.1 | Hepatitis C virus subtype 6k isolate KM41, complete genome | 8580 | .t...t..........___ | 8595 | 73 |
| EU246933.1 | Hepatitis C virus strain D33 polyprotein gene, complete cds | 6863 | .........gc.....___ | 6878 | 73 |
| FJ462440.1 | Hepatitis C virus isolate QC93, complete genome | 6882 | ..........c...a.___ | 6897 | 73 |
| EU408327.1 | Hepatitis C virus isolate 535318 polyprotein precursor, gene, complet | 3824 | ______............_ | 3813 | 63 |